See also: CSB Alumni, PhD Projects
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PhD Student
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Supervisors
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Project
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Katinka Becker
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1. Alexander Bockmayr (Freie Universität Berlin, Mathematics in Life Science, Institute for Mathematics); 2. Nils Blüthgen (Charité)
(07.2014-07.2017)
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Modeling of signaling pathways from perturbation data
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Johannes Eckstein
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1. Hermann-Georg Holzhütter (Charité - Universitätsmedizin Berlin, Computational Systems Biochemistry Group)
(09.2015-08.2017)
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Mathematical modeling of biomembranes and their influences on cellular processes
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Torsten Groß
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1. Nils Blüthgen (Charité – Universitätsmedizin Berlin, Institute for Pathology); 2. Alexander Bockmayr (FU)
(07.2014-07.2017)
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Interference of signal transduction pathways from phosphorylation data to identify targets of combinatorial cancer therapy
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Asija Diag
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1. Nikolaus Rajewsky (Max Delbrück Center for Molecular Medicine Berlin-Buch, Systems Biology of Gene Regulatory Elements); 2. Markus Landthaler (MDC)
(09.2015-08.2018)
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A spatially resolved RNA map for the Caenorhabditis elegans germline
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Ekaterina Eroshok
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1. Uwe Ohler (Max Delbrück Center for Molecular Medicine Berlin-Buch, Computational Regulatory Genomics); 2. Markus Landthaler (MDC)
(10.2015-10.2018)
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Upstream open reading frames and their role in translation regulation
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Patrick Pett
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1. Hanspeter Herzel (Humboldt-Universität zu Berlin, Theoretical Biology, Institute for Biology); 2. Nils Blüthgen (Charité)
(11.2015-10.2018)
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Systems level generation, propagation and synchronization of circadian rhythmicity in the mouse liver and its connection to metabolism
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Andrea Auconi
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1. Edda Klipp (Humboldt-Universität Berlin, Institute for Biology, Theoretical Biophysics); 2. Alexander Bockmayr (FU)
(11.2015-11.2018)
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Causal influence and information flows in small signaling pathways
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Guoyu Wu
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1. Zhike Zi (Max Planck Institute for Molecular Genetics, Cell Signaling Dynamics; 2. Edda Klipp
(HU, Theor Biophys)
(12.2015-11.2018)
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Investigating TGF-β-regulated cell proliferation decisions in single cells
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Julia Katharina Schlichting
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1. Edda Klipp (Humboldt-Universität Berlin, Institute for Biology, Theoretical Biophysics); 2. Nils Blüthgen (Charité)
(01.2016-12.2018)
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Mathematical modeling of the yeast cell cycle
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Marjan Faizi
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1. Ralf Steuer (Humboldt-Universität zu Berlin, Theoretical Biology, Institute for Biology); 2. Alexander Bockmayr (FU)
(02.2016-02.2019)
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Cellular trade-offs and resource allocation in phototrophic metabolism
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Zeba Sultana
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1. Edda Schulz (Max Planck Institute for Molecular Genetics, Regulatory Networks in Stem Cells); 2. Nils Blüthgen (Charité)
(04.2016-03.2019)
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Modeling the impact of double X-dosage on signaling pathways implicated in pluripotency
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Orsalia Hazapis
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1. Markus Landthaler (Max Delbrück Center for Molecular Medicine Berlin-Buch, Genomcentrum); 1. Uwe Ohler (MDC)
(05.2016-05.2019)
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Identifying the role and function of ribonucleoprotein complexes: a bioinformatic analysis for understanding and categorizing the function of RNPs
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Lam-Ha Ly
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1. Martin Vingron (Max Planck Institute for Molecular Genetics, Computational Molecular Biology)
(10.2016-10.2019)
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Statistical analysis of single-cell RNA-seq data
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Mareike Simon
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1. Jana Wolf (Max Delbrück Center for Molecular Medicine Berlin-Buch)
(01.2017-12.2019)
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Integrated analysis of metabolic and signaling processing in tumor cells
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Daniel Schwabe
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1. Martin Falcke (Max Delbrück Center for Molecular Medicine Berlin-Buch)
(02.2017-01.2020)
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Quantification and non-genetic origins of cell-to-cell variability
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