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PhD Projects - CSB Alumni

PhD Student

Supervisor

Project

Lotte Teufel         (2015-2016)

1. Edda Klipp (Humboldt-Universität Berlin, Institute for Biology, Theoretical Biophysics); 2. Andreas Herrmann (HU, Mol Biophys)

RNA expression during the budding yeast cell cycle: a transcriptome-wide investigation

Priyanka Banerjee (2013-2016)

1. Hermann-Georg Holzhütter (Charité - Universitätsmedizin Berlin, Computational Systems Biochemistry Group), 2. Robert Preissner (Charité)

Analysis and prediction of specific inhibitors in protein-protein interactions in signal transduction networks

Janine Vierheller  (2013-2016)

1. Martin Falcke (Max Delbrück Center for Molecular Medicine Berlin-Buch); 2. Hermann-Georg Holzhütter (Charité)

Modeling excitation coupling in ventricular cardiac myocytes

Christin Wallstab  (2012-2016)

1. Hermann-Georg Holzhütter (Charité - Universitätsmedizin Berlin, Computational Systems Biochemistry Group); 2. Edda Klipp (HU, Theor Biophys)

Mathematical modeling of lipid droplet dynamics in hepatocytes

Fabian Konrath    (2014-2016)

1. Jana Wolf (Max Delbrück Center for Molecular Medicine Berlin-Buch); 2. Edda Klipp (HU, Theor Biophys)

Modeling signal transduction and gene expression of the NF-ΚB system in cellular decisions

Edgar Steiger      (2014-2017)

1. Martin Vingron (Max Planck Institute for Molecular Genetics, Computational Molecular Biology); 2. Hanspeter Herzel (HU, ITB)

Gene regulatory networks

Gerrit Korff         (2011-2015)

1. Ernst-Walter Knapp (Freie Universität Berlin, Institute for Chemistry and Biochemistry, Institute for Mathematics)

Amino acid-specific classification to enhance protein secondary structure prediction

Marcin Kolinski    (2012-2015)

1. Markus Landthaler (Max Delbrück Center for Molecular Medicine Berlin-Buch, RNA Biology and Posttranscriptional Regulation)

Characterization of the differential protein-RNA interactome during ES cell differentiation

Andrei Filipchyk   (2012-2015)

1. Nikolaus Rajewsky (Max Delbrück Center for Molecular Medicine Berlin-Buch, Systems Biology of Gene Regulatory Elements)

Computational analyses of gene regulation

Friedemann Uschner (2011-2014)

1. Edda Klipp (Humboldt-Universität Berlin, Institute for Biology, Theoretical Biophysics); 2. Nikolaus Rajewsky (MDC)

Information processing in cellular systems

Mahsa Ghanbari   (2011-2014)

1. Martin Vingron (Max Planck Institute for Molecular Genetics, Computational Molecular Biology); 2. Hanspeter Herzel (HU)

Reverse engineering biological networks by mathematical methods

Willi Gottstein      (2011-2014)

1. Hanspeter Herzel (Humboldt-Universität zu Berlin, Theoretical Biology, Institute for Biology); 2. Hermann-Georg Holzhütter (Charité)

Temporal coordination of metabolism

Gregor Mönke     (2011-2014)

1. Hanspeter Herzel (Humboldt-Universität zu Berlin, Theoretical Biology, Institute for Biology); 2. Martin Falcke (MDC)

Stochastic dynamics inside cells

Jörn Schmiedel    (2011-2014)

1. Nils Blüthgen (Charité – Universitätsmedizin Berlin, Institute for Pathology); 2. Alexander van Oudenaarden (Hubrecht Inst);
3. Hanspeter Herzel (HU)

Elucidation of mircroRNA-mediated post-transcriptional gene regulation

Aljoscha Palinkas (2011-2014)

1. Alexander Bockmayr (Freie Universität Berlin, Mathematics in Life Science, Institute for Mathematics); 2. Hermann-Georg Holzhütter (Charité)

Integrated models of gene regulation and metabolism in the hepatocyte

 

   

 

News

Next CSB seminar

May 03, 2018 with
Nikolaus Rajewsky (MDC Berlin)

 

 

 

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